Hello,
I have a couple of questions for you, but should be able to help you out. First, what type of climate is the spa located in? Second, how are your filter cycles set? If the spa is in a warmer climate, having the spa run 24 hours per day can sometimes cause overheating, as the heat transferred from your circulation pump into the water will cause the temperature to climb.
The rH Nf error is the spa pack telling you that it has detected a lack of water flow through the heater. You mentioned that you replaced the micron filter (pinkish purple, located in the middle of the skimmer). Did the errors appear before the filter was replaced? Did they go away for any period of time following the filter replacement? Is your source water "hard" or "soft"? Well water can sometimes cause the micron filters to clog very prematurely, in which case a blue pleated filter can be used instead of the micron filter. Water filtration is slightly less, but if your water chemistry is good, you should see little to no difference.
Is the spa set to "Economy" mode or "Standard" mode? If set to Economy, the water temperature can drop up to 20 degrees F when the spa is not in use, depending on how your filter cycles are set.
The In.XM boxes are designed to be completely waterproof, however the water falling on it could have caused an issue if all of the cables were not completely seated properly. It is possible for there to be an issue with the new heater as well. All of the temperature and flow sensors are contained within the heater itself, and the only way to determine if the heater is the cause, after checking all other possible issues first, would be to try a new heater and see if the problem goes away.
Lastly, the spa pack itself can be "retaught" the readings it should be looking for. If none of the above works, let me know and I can guide you through the relearning process. It will require removing the skirt panel to access the spa pack behind it, and takes about 5 minutes to do.