If by chance your spa has two pumps, swap the plugs and see if the controller will run the second pump while it is plugged into the main pump's plug. Another way is unplug the pump and test the voltage. If you have voltage it is the pump.
From what you are describing I betting it it the pump
Thanks for the reply but there is only one pump and it does make a kind of funny noise when it turns on the 2 seconds but water does flow. Will try new pump and if that does not work can always return it and buy new spa pack.